Transcript 26373 | MetamORF

Transcript

ID CARD

MetamORF ID

26373

ENSMUST00000091579

Name

Gkap1-201

Strand

Biotype

protein_coding

Start-end positions

58233346-58274188

CDS Start-stop positions

58233611-58264157

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:56278

Aliases

42kDa,
4933400B15Rik, D13Ertd340e, ENSMUSG00000021552,
Gkap1, Gkap42, MGI:1891694,
NCBI:56278, OFF:Gkap1

Chr 13

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
27986	273	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27104	213	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Testis
27612	129	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
26510	66	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
28095	165	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27464	90	CTG ...	LSH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF, Testis
1301831	117	ATT ...	IEQ ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
27233	198	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
27173	186	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
28143	291	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27897	210	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27139	147	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
943898	282	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
941700	138	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
26372	141	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
669606	30	TTG ...	LSK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
27998	93	ATG ...	MFN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
28108	285	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27714	174	TTG ...	LPC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
1609854	42	ATG ...	MKM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
28328	84	ATG ...	MSF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
27962	249	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Testis
27635	105	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
27967	138	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis

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