Transcript 609002

Transcript

ID CARD

MetamORF ID

609002

ENSMUST00000173235

Name

Gigyf2-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

87403667-87442020

CDS Start-stop positions

-87440365

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:227331

Aliases

2610016F01Rik,
A830080H02Rik, AI852361, AW259676,
BC006835, ENSMUSG00000048000, Gigyf2,
MGI:2138584, mKIAA0642, NCBI:227331,
OFF:Gigyf2, Tnrc15

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
18326	165	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
609001	144	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
773984	114	GTG ...	VDQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF	MEF
721160	60	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
720619	75	CTG ...	LDT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, Liver
797181	87	ATG ...	MNL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
782118	102	CTG ...	LWG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
31552	177	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
641111	84	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
318856	174	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
40992	192	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
31443	108	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1155050	48	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
71574	90	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
30020	201	CTG ...	LHT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
1139521	45	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
799064	66	TTG ...	LIF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
42057	114	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
801368	195	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
690064	90	TTG ...	LDQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
1484090	48	ATG ...	MMS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
679465	48	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
742905	75	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
790537	123	TTG ...	LRK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
784910	66	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF

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