Transcript 11083 | MetamORF

Transcript

ID CARD

MetamORF ID

11083

ENSMUST00000165649

Name

Ghitm-202

Strand

Biotype

protein_coding

Start-end positions

37120092-37135252

CDS Start-stop positions

37122142-37133764

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:66092

Aliases

1010001P14Rik,
C77840, ENSMUSG00000041028, Ghitm,
MGI:1913342, MICS1, NCBI:66092,
OFF:Ghitm, PTD010, Tmbim5

Chr 14

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29777	96	TTG ...	LLE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
30201	87	TTG ...	LRL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
28461	69	GTG ...	VVC ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
30429	48	ATG ...	MAW ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
465737	36	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Spleen_B_cell
350443	30	TTG ...	LEL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
29810	81	CTG ...	LLV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
947373	111	ATC ...	IKW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
420928	75	CTG ...	LSF ...	Ribo-seq	CTG		12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, Liver, MEF, Neutrophil, Spleen_B_cell
1179520	153	AGG ...	RQP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
421105	129	AGC ...	SIS ...	Ribo-seq	AGC		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, C2C12
1309421	57	ATT ...	IYA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
345266	36	ATG ...	MRL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC
30449	93	TTG ...	LSL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell, v6-5
28853	99	TTG ...	LLL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
945124	54	AGG ...	RQP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
785081	51	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	B_cell
945751	42	ACG ...	TCR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
29451	78	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
467226	45	GTG ...	VVE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF Upstream	BMDC, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
29311	93	CTG ...	LEE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
343257	54	TTG ...	LWE ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
30312	72	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
945843	30	ATA ...	IEF ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
29426	81	CTG ...	LQG ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
28898	42	CTG ...	LVP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Testis, v6-5
30003	87	CTG ...	LEE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
1309648	33	AGG ...	RPL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
30209	132	CTG ...	LSI ...	Ribo-seq	CTG		21	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
785042	63	TTG ...	LRD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	B_cell
353757	39	ATG ...	MEL ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
347001	57	ATG ...	MVH ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, v6-5
785630	180	GTG ...	VSP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
30444	87	TTG ...	LEL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
944554	54	AGG ...	RSS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
29343	102	GTG ...	VYR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
353055	30	ATG ...	MRL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC
786270	48	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	B_cell, v6-5
30135	90	TTG ...	LLE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
29256	36	CTG ...	LWP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
30414	33	GTG ...	VTG ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
30220	54	ATG ...	MSR ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
30469	81	CTG ...	LEC ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
30326	75	CTG ...	LLV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
29984	66	TTG ...	LER ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
348760	60	CTG ...	LVL ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
30026	72	TTG ...	LYT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
29369	72	TTG ...	LCV ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, C2C12, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
11082	54	ATG ...	MLP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
30240	72	CTG ...	LSF ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1178705	30	ATC ...	IWL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
28416	72	TTG ...	LER ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
945110	60	AGG ...	RPK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
946555	117	ATC ...	IKW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
945250	126	ATT ...	ISD ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
946149	30	ATA ...	IYL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
30034	93	TTG ...	LLL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
344726	39	ATG ...	MEL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
346125	54	CTG ...	LEA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, v6-5
29801	39	GTG ...	VPL ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
30371	42	GTG ...	VVE ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
28496	48	CTG ...	LWL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
946054	33	ATT ...	ISS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
29130	54	ATG ...	MAW ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
28454	117	CTG ...	LLS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, v6-5
1306940	180	AAG ...	KYW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
945762	66	ATT ...	IKY ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
944568	231	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14

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