Transcript 28417 | MetamORF

Transcript

ID CARD

MetamORF ID

28417

ENSMUST00000042564

Name

Ghitm-201

Strand

Biotype

protein_coding

Start-end positions

37120824-37135139

CDS Start-stop positions

37122142-37133764

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:66092

Aliases

1010001P14Rik,
C77840, ENSMUSG00000041028, Ghitm,
MGI:1913342, MICS1, NCBI:66092,
OFF:Ghitm, PTD010, Tmbim5

Chr 14

ORFs

78 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
353408	120	TTG ...	LQS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
945762	66	ATT ...	IKY ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
944568	231	ATC ...	ICL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
29426	81	CTG ...	LQG ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
348760	60	CTG ...	LVL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
30034	93	TTG ...	LLL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
344037	180	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
28454	117	CTG ...	LLS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
946042	210	ATC ...	IAH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
946149	30	ATA ...	IYL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
349127	108	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
343257	54	TTG ...	LWE ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
946473	84	AGG ...	RGA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
29451	78	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
787946	198	CTG ...	LTI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
344726	39	ATG ...	MEL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, R1E
30312	72	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E
30469	81	CTG ...	LEC ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
29369	72	TTG ...	LCV ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
944554	54	AGG ...	RSS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
350945	102	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
345266	36	ATG ...	MRL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
352966	57	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
29311	93	CTG ...	LEE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
945124	54	AGG ...	RQP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30429	48	ATG ...	MAW ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
353234	114	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
944989	57	AAG ...	KRQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
29256	36	CTG ...	LWP ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
30201	87	TTG ...	LRL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Testis
350443	30	TTG ...	LEL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell
346051	234	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
30268	129	TTG ...	LLC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Testis
945634	72	AAG ...	KVV ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
29810	81	CTG ...	LLV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
352316	117	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
945110	60	AGG ...	RPK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
28461	69	GTG ...	VVC ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
787346	189	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
351500	159	TTG ...	LNC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
944734	183	AGG ...	RKY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30135	90	TTG ...	LLE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
30449	93	TTG ...	LSL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Testis
350436	99	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
351756	129	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
30431	138	CTG ...	LCF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Testis
30026	72	TTG ...	LYT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, R1E, Testis
351508	183	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
945843	30	ATA ...	IEF ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
785630	180	GTG ...	VSP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain
28853	99	TTG ...	LLL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
30444	87	TTG ...	LEL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
29777	96	TTG ...	LLE ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
353757	39	ATG ...	MEL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, R1E
29801	39	GTG ...	VPL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF
352362	126	CTG ...	LCL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain
28898	42	CTG ...	LVP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell
945751	42	ACG ...	TCR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
346125	54	CTG ...	LEA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
353188	48	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
29130	54	ATG ...	MAW ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
947373	111	ATC ...	IKW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
946555	117	ATC ...	IKW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30326	75	CTG ...	LLV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E
347001	57	ATG ...	MVH ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell
343540	168	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
353055	30	ATG ...	MRL ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
945250	126	ATT ...	ISD ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
29343	102	GTG ...	VYR ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
11082	54	ATG ...	MLP ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, R1E, Testis
28416	72	TTG ...	LER ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
344371	165	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
946054	33	ATT ...	ISS ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
30003	87	CTG ...	LEE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
28496	48	CTG ...	LWL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver
29984	66	TTG ...	LER ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, Testis
30220	54	ATG ...	MSR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, R1E, Testis
352852	51	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain

Export data