Transcript 1134754

Transcript

ID CARD

MetamORF ID

1134754

ENSMUST00000160981

Name

Gfm2-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

97150350-97162902

CDS Start-stop positions

-97151664

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:320806

Aliases

6530419G12Rik,
A930009M04Rik, EF-G2mt, EFG2,
ENSMUSG00000021666, Gfm2, MGI:2444783,
MST027, NCBI:320806, OFF:Gfm2,
RRF2mt

Chr 13

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1136548	105	GTG ...	VLC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
339236	72	GTG ...	VQP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
339295	165	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
1136806	126	CTG ...	LAQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
27109	39	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
337478	63	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
335263	198	CTG ...	LPI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
339335	162	GTG ...	VDV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Liver
26753	51	GTG ...	VTT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
335947	60	CTG ...	LDA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
1134885	108	GTG ...	VWE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1137348	87	TTG ...	LKN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
1400923	63	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
1135729	111	GTG ...	VPV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
1136573	102	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5
1134753	132	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, v6-5

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