Transcript 185739

Transcript

ID CARD

MetamORF ID

185739

ENSMUST00000064454

Name

Gcn1l1-201

Strand

Biotype

protein_coding

Start-end positions

115565254-115622654

CDS Start-stop positions

115565289-115622150

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:231659

Aliases

4932409G22,
AL022764, ENSMUSG00000041638, G431004K08Rik,
Gcn1, GCN1L, Gcn1l1,
MGI:2444248, mKIAA0219, NCBI:231659,
OFF:Gcn1

Chr 5

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1665143	93	ATG ...	MWS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1088004	72	CTG ...	LVQ ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1663093	51	GTG ...	VCH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1662400	60	CTG ...	LDC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
172321	48	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1666474	57	TTG ...	LGM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1558318	57	CTG ...	LFN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1663336	42	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
520525	42	CTG ...	LHE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1659745	69	ATG ...	MWS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
185738	81	ATG ...	MHR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, NSC
573287	96	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
519870	33	GTG ...	VPW ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1087033	69	GTG ...	VQP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1558478	63	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1557517	141	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1467202	42	CTG ...	LTK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
574149	99	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
564554	81	GTG ...	VTP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1663292	39	GTG ...	VHC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1665899	63	ATG ...	MTR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
567850	102	CTG ...	LMR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
559400	99	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
522316	75	GTG ...	VPA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
522042	57	ATG ...	MWL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
574135	141	TTG ...	LPS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1558084	42	TTG ...	LAT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
183498	36	CTG ...	LQV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, v6-5
1383029	60	GTG ...	VPC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
572620	84	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1664677	33	CTG ...	LGA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
561876	51	CTG ...	LAV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1087439	117	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1511261	69	CTG ...	LQC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1736713	33	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1664583	33	TTG ...	LGM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1090991	78	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
517993	63	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1558073	45	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
566189	42	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
572037	129	CTG ...	LKP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
518972	90	CTG ...	LDG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
1090635	225	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
573540	87	TTG ...	LMT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1086003	39	ATG ...	MST ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
573518	48	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
176345	78	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
521830	36	GTG ...	VQA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	NSC, Spleen_B_cell

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