Transcript 51956 | MetamORF

Transcript

ID CARD

MetamORF ID

51956

ENSMUST00000200373

Name

Gatad2b-206

Strand

Biotype

retained_intron

Start-end positions

90293184-90352552

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:229542

Aliases

AL118180,
C430014D17Rik, ENSMUSG00000042390, Gatad2b,
MGI:2443225, mKIAA1150, NCBI:229542,
OFF:Gatad2b, P66beta

Chr 3

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
507163	78	CTG ...	LHM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
139412	87	ATG ...	MEI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
136389	96	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
751874	69	CTG ...	LIM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
128567	156	TTG ...	LRC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
132042	102	ATG ...	MKR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
52205	126	CTG ...	LRD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
506694	33	CTG ...	LVG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil
53196	108	TTG ...	LEE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
53575	213	CTG ...	LLK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
54210	180	GTG ...	VPH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
51955	273	CTG ...	LAK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
52129	141	CTG ...	LEI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
53548	198	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
131006	114	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
504364	114	TTG ...	LYR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
752133	48	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, MEF
132331	93	TTG ...	LSA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
133649	123	ATG ...	MAV ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
54735	249	GTG ...	VNR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
52413	240	GTG ...	VSS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
131827	195	TTG ...	LAN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
536110	78	TTG ...	LFC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
1682841	33	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
820431	198	CTG ...	LTY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
130727	117	GTG ...	VVS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
135324	69	ATG ...	MET ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
131506	39	GTG ...	VDM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
54293	96	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
136403	33	ATG ...	MSE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
52987	87	CTG ...	LLK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
128274	228	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
540516	63	ATG ...	MRP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
54514	174	TTG ...	LAL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
504524	105	ATG ...	MQH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
52820	108	TTG ...	LLH ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
135479	51	CTG ...	LLE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF
52327	90	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
54670	93	CTG ...	LVL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
53250	261	CTG ...	LKM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis
139733	144	ATG ...	MSY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
52661	156	CTG ...	LEK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Testis

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