Transcript 47739 | MetamORF

Transcript

ID CARD

MetamORF ID

47739

ENSMUST00000110454

Name

Galk2-203

Strand

Biotype

retained_intron

Start-end positions

125866268-125947350

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:69976

Aliases

2810017M24Rik,
AI327030, ENSMUSG00000027207, Galk2,
Gk2, MGI:1917226, NCBI:69976,
OFF:Galk2

Chr 2

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
738369	30	CTG ...	LAN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
47738	219	TTG ...	LQW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
736324	57	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
498113	45	GTG ...	VDI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
739495	75	CTG ...	LNP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
739383	150	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
733564	201	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
731983	30	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
730741	186	GTG ...	VQS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
737131	51	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
101692	84	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
735176	87	ATG ...	MPF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
741151	36	CTG ...	LCC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
104505	90	CTG ...	LWI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
732146	48	ATG ...	MFV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
741095	45	TTG ...	LLN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
736560	108	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
116262	54	CTG ...	LYR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
106978	51	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
113613	153	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
116540	60	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
739499	162	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3

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