Transcript 298831

Transcript

ID CARD

MetamORF ID

298831

ENSMUST00000106259

Name

Gaa-203

Strand

Biotype

protein_coding

Start-end positions

119267887-119285454

CDS Start-stop positions

119270133-119285064

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:14387

Aliases

E430018M07Rik,
ENSMUSG00000025579, Gaa, MGI:95609,
NCBI:14387, OFF:Gaa

Chr 11

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22113	126	CTG ...	LGE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver
316965	99	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1760363	48	CTG ...	LDP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
21436	150	CTG ...	LEG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver
1292375	93	ACG ...	TPE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
22067	114	GTG ...	VKA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
295911	84	TTG ...	LTV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
313576	156	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
1394885	228	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
1396198	57	GTG ...	VCA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
656153	96	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
1484407	69	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
19560	33	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Liver, R1E
657879	81	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
298830	111	CTG ...	LFE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1486688	78	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
306051	111	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver
1292816	99	AGG ...	RYQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
307042	60	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
300909	57	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
770541	36	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
313690	192	CTG ...	LDR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, v6-5
291418	111	ATG ...	MTW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
772648	66	TTG ...	LEN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
21647	117	CTG ...	LVK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Liver
314151	168	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
304448	54	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain, E14
21671	171	CTG ...	LSL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver
17797	165	CTG ...	LGV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver
23707	99	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, Liver
21073	30	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver, R1E
654100	72	TTG ...	LTG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
1599003	111	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
642955	93	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
310638	66	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
298098	90	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
775436	30	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1447534	114	CTG ...	LEP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
453725	33	GTG ...	VIA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
295377	33	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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