Transcript 404450

Transcript

ID CARD

MetamORF ID

404450

ENSMUST00000025728

Name

Frmd8-201

Strand

Biotype

protein_coding

Start-end positions

5849702-5875274

CDS Start-stop positions

5852621-5874794

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:67457

Aliases

1200004M23Rik,
2310035N23Rik, 4931429L16Rik, AU018809,
ENSMUSG00000024816, Frmd8, iTAP,
MGI:1914707, NCBI:67457, OFF:Frmd8

Chr 19

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1201953	279	AGG ...	RLP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
725647	156	GTG ...	VCT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
724254	51	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
727399	129	ATG ...	MSP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
722987	39	ATG ...	MVT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1204716	180	AGG ...	RLP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
719317	72	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
1204672	81	AGG ...	RVA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
719298	54	ATG ...	MMR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1500128	39	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
963685	138	AGG ...	RPP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
407983	87	ATG ...	MET ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Brain, Glioma, Liver, MEF, MESC
721194	60	CTG ...	LSC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1500157	42	GTG ...	VRQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	NSC
489798	60	ATG ...	MAR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
725122	132	ATG ...	MMS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
407945	51	CTG ...	LVF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
727007	141	GTG ...	VRP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
406359	39	CTG ...	LEG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
726189	117	ATG ...	MSL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
719962	36	GTG ...	VTV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
404910	93	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
1204451	156	AGG ...	RRV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
963644	39	TTG ...	LTM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
726230	90	ATG ...	MFF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, R1E
406416	96	ATG ...	MLA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Brain, Glioma, Liver, MEF, MESC
727493	177	CTG ...	LWP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
490046	51	TTG ...	LTS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Spleen_B_cell
1201774	87	ATC ...	ITL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
726451	135	ATG ...	MMM ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, NSC
1202931	69	AGG ...	RKS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
404449	30	CTG ...	LLE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
720671	75	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
725586	147	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
1458760	33	ATG ...	MWK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
406570	33	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
723451	126	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
961482	72	AGG ...	RPP ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1203539	255	AGG ...	RRV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
722415	30	GTG ...	VRA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
408348	30	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain

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