Transcript 847326

Transcript

ID CARD

MetamORF ID

847326

ENSMUST00000186613

Name

Fn1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

71629457-71641288

CDS Start-stop positions

71632041-

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:14268

Aliases

E330027I09,
ENSMUSG00000026193, Fn, Fn-1,
Fn1, MGI:95566, NCBI:14268,
OFF:Fn1

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
866334	162	CTG ...	LYN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Brain, Liver, Neutrophil, R1E
861264	54	ATG ...	MPR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E
857862	42	CTG ...	LYL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E
853486	42	TTG ...	LGI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E
14621	63	GTG ...	VRH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
864368	36	CTG ...	LLW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, R1E
849305	90	GTG ...	VHG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
892193	117	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Liver, R1E
889978	63	ATG ...	MKG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
859278	123	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
890618	42	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
13755	36	GTG ...	VAL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
92849	30	CTG ...	LST ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
849731	105	GTG ...	VIY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver, R1E
651502	66	GTG ...	VLL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
890429	96	CTG ...	LGH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
12997	66	ATG ...	MVR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
677801	60	CTG ...	LLR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
855784	69	GTG ...	VGN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
671927	99	CTG ...	LGE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E
888017	51	CTG ...	LFP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Liver
856071	63	GTG ...	VEC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Liver

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