Transcript 449488

Transcript

ID CARD

MetamORF ID

449488

ENSMUST00000133218

Name

Fh1-203

Strand

Biotype

retained_intron

Start-end positions

175601378-175606647

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:14194

Aliases

ENSMUSG00000026526,
Fh, Fh-1, Fh1,
MGI:95530, NCBI:14194, OFF:Fh1

Chr 1

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
449487	147	GTG ...	VNP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
485824	42	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
1123638	33	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
756017	39	TTG ...	LAI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
353091	54	CTG ...	LCG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
337389	69	TTG ...	LQP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
1345402	30	TTG ...	LEA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
66001	162	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
301288	102	ATG ...	MCC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
18885	105	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
18973	159	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
100386	54	ATG ...	MTK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
47630	126	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
97507	45	GTG ...	VWS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, v6-5
38263	141	CTG ...	LGD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
328593	72	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
793374	72	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
770869	45	TTG ...	LNL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
778613	81	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
161226	36	TTG ...	LPR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
468177	39	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

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