Transcript 44484 | MetamORF

Transcript

ID CARD

MetamORF ID

44484

ENSMUST00000192171

Name

Fbxo18-210

Strand

Biotype

processed_transcript

Start-end positions

11762932-11777550

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:50755

Aliases

AU015756,
ENSMUSG00000058594, Fbh1, Fbx18,
Fbxo18, MGI:1354699, NCBI:50755,
OFF:Fbh1

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
732955	120	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
728075	255	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
966580	39	AAG ...	KQF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
730987	63	TTG ...	LEC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
727651	189	TTG ...	LPD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
115543	63	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
969848	36	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
99983	102	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
110453	123	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
964730	48	ATC ...	IAW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
44483	36	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
734469	237	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
730041	156	TTG ...	LPC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
96809	42	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
728416	42	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
730429	141	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
114641	72	GTG ...	VDG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E
45654	60	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Testis
735068	72	ATG ...	MGF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
94978	102	TTG ...	LIN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E
734452	54	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
47226	39	GTG ...	VVS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
115025	96	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
109168	84	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
115595	111	TTG ...	LRT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

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