Transcript 508990

Transcript

ID CARD

MetamORF ID

508990

ENSMUST00000155204

Name

Faf1-203

Strand

Biotype

processed_transcript

Start-end positions

109840785-109925378

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:14084

Aliases

AA408698,
Dffrx, ENSMUSG00000010517, Faf1,
Fam, MGI:109419, NCBI:14084,
OFF:Faf1

Chr 4

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
552572	171	CTG ...	LTM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Neutrophil, R1E
1177407	36	GTG ...	VTA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
559038	87	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
157936	36	TTG ...	LLS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
545185	63	TTG ...	LAA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
552552	51	TTG ...	LHK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF
548442	54	CTG ...	LQW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
1081891	39	ATG ...	MVT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	v6-5
513401	63	CTG ...	LSQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
825850	33	TTG ...	LFF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
555677	78	ATG ...	MPY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1058418	90	CTG ...	LII ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
510534	30	CTG ...	LTK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
508989	108	GTG ...	VFC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, Spleen_B_cell

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