Transcript 846286

Transcript

ID CARD

MetamORF ID

846286

ENSMUST00000147909

Name

Etnk2-204

Strand

Biotype

retained_intron

Start-end positions

133363576-133375050

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:214253

Aliases

4933417N20Rik,
AI197444, EKI 2, Eki2,
ENSMUSG00000070644, Etnk2, MGI:2443760,
NCBI:214253, OFF:Etnk2, Tuc1

Chr 1

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
984350	78	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver
888065	48	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
26942	165	ATG ...	MPH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Liver
846285	159	GTG ...	VDR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
849861	66	GTG ...	VPC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
888453	123	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
31174	186	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1413534	93	GTG ...	VFC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
892645	273	ATG ...	MWR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
985133	267	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
1394235	66	ATG ...	MSH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1402096	66	ATG ...	MDF ...	Predicted Ribo-seq	ATG	strong	2	sORFs_org_Mouse Mackowiak2015	Intronic sORF	Liver
1392805	96	GTG ...	VVF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1396976	138	CTG ...	LAW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
1388894	129	TTG ...	LKE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1405777	159	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
1414527	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
847592	57	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
856052	75	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Liver
34787	60	CTG ...	LRV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver
890247	126	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
846699	255	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
856688	57	GTG ...	VQG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
29969	129	ATG ...	MLA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Liver
1411962	99	GTG ...	VCF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
1403246	150	TTG ...	LEQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
858772	195	TTG ...	LVR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Liver
991992	57	CTG ...	LVE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
1403947	198	TTG ...	LIA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1412260	117	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
858188	162	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
889461	42	CTG ...	LGP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
993364	249	GTG ...	VPC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
1403718	153	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
854987	105	GTG ...	VEQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Liver
875340	186	GTG ...	VYG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Liver
846639	198	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
979117	228	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
1406534	108	TTG ...	LDS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
20741	198	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
991982	60	CTG ...	LYL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver
90215	87	CTG ...	LLC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver
857968	165	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver
888037	174	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Liver
852075	72	CTG ...	LCY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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