Transcript 20742 | MetamORF

Transcript

ID CARD

MetamORF ID

20742

ENSMUST00000129213

Name

Etnk2-201

Strand

Biotype

protein_coding

Start-end positions

133365332-133380316

CDS Start-stop positions

133365630-133379389

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:214253

Aliases

4933417N20Rik,
AI197444, EKI 2, Eki2,
ENSMUSG00000070644, Etnk2, MGI:2443760,
NCBI:214253, OFF:Etnk2, Tuc1

Chr 1

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
860310	183	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
864938	60	ATG ...	MCR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1416919	51	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
867566	147	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1421123	225	ATG ...	MWR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC
34787	60	CTG ...	LRV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
20741	198	TTG ...	LTE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
1417443	141	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1413080	51	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
29969	129	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
26942	165	ATG ...	MPH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	Glioma, Liver, MEF, MESC, Testis
90215	87	CTG ...	LLC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
1420627	111	ATG ...	MHK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
31174	186	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Testis
1404983	42	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
864181	135	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

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