Transcript 94589 | MetamORF

Transcript

ID CARD

MetamORF ID

94589

ENSMUST00000146488

Name

Etl4-217

Strand

Biotype

retained_intron

Start-end positions

20722378-20785699

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:208618

Aliases

6620402G01Rik,
9430077C05Rik, BC026657, E330027G05Rik,
ENSMUSG00000036617, Etl-4, Etl4,
MGI:95454, NCBI:208618, OFF:Etl4,
Skt

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110757	129	GTG ...	VYI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
112846	228	CTG ...	LHP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
101445	117	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
100393	63	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
96854	84	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
96724	162	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
103825	189	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
109677	42	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
109626	138	TTG ...	LQN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
97606	63	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
104184	66	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
110316	51	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
107585	135	CTG ...	LEI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
97117	180	CTG ...	LQN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
115263	105	ATG ...	MHS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
94588	288	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
100808	126	CTG ...	LIS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
114714	114	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
115709	252	GTG ...	VGD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
106354	132	CTG ...	LVY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
108932	297	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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