Transcript 1061998

Transcript

ID CARD

MetamORF ID

1061998

ENSMUST00000111802

Name

Erp29-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

121445241-121452348

CDS Start-stop positions

121449140-121452340

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:67397

Aliases

1200015M03Rik,
2810446M09Rik, AW209030, ENSMUSG00000029616,
Erp28, Erp29, Erp31,
MGI:1914647, NCBI:67397, OFF:Erp29,
PDI-Db

Chr 5

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
172278	108	ATG ...	MER ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil
179859	39	GTG ...	VPF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, NSC
521290	51	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
182384	93	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, Neutrophil
1908	123	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
66191	75	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
175186	45	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Neutrophil
180921	153	TTG ...	LVK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	MEF, Neutrophil, NSC
174644	150	GTG ...	VKF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	MEF, Neutrophil, NSC
63751	132	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
181777	75	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF

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