Transcript 41767 | MetamORF

Transcript

ID CARD

MetamORF ID

41767

ENSMUST00000162534

Name

Ermp1-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

29612407-29646027

CDS Start-stop positions

29617861-

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:226090

Aliases

b2b2633Clo,
D19Ertd410e, D19Wsu12e, ENSMUSG00000046324,
Ermp1, Fxna, MGI:106250,
mKIAA1815, NCBI:226090, OFF:Ermp1

Chr 19

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404623	75	TTG ...	LIR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	R1E
1007083	210	TTG ...	LCG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
488625	132	GTG ...	VAI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	NMD sORF	Brain, R1E
488328	138	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
407072	165	GTG ...	VHC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1159530	162	GTG ...	VNS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
402945	54	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
403106	111	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
961220	63	AAG ...	KFP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	NMD sORF	BMDC
1157257	144	GTG ...	VFI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
406924	159	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	R1E
41766	222	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	R1E, Testis
402975	198	TTG ...	LGM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	R1E
1007436	204	CTG ...	LYL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1007595	189	CTG ...	LFF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1007290	198	CTG ...	LGE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1007089	126	CTG ...	LVC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
404332	114	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
1363411	207	CTG ...	LYL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1007575	123	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
1363510	138	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
403263	162	TTG ...	LQD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
407119	81	CTG ...	LYG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain, R1E
1158551	81	CTG ...	LDA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
403428	141	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
405411	171	CTG ...	LFV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1159129	72	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	R1E
407635	171	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Brain

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