Transcript 18131 | MetamORF

Transcript

ID CARD

MetamORF ID

18131

ENSMUST00000155304

Name

Erlec1-205

Strand

Biotype

retained_intron

Start-end positions

30942682-30948202

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:66753

Aliases

4933407N01Rik,
ENSMUSG00000020311, Erlec1, MGI:1914003,
NCBI:66753, OFF:Erlec1

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91409	36	CTG ...	LRV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E, Testis
18130	69	CTG ...	LTD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
646776	120	GTG ...	VND ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
642215	96	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
643384	54	ATG ...	MTY ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
19933	168	TTG ...	LPS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
19973	30	GTG ...	VPF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Liver, MEF, Testis, v6-5
302615	51	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
295687	30	CTG ...	LLE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
91017	102	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Testis
91728	57	TTG ...	LEQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E, Testis

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