Transcript 59778 | MetamORF

Transcript

ID CARD

MetamORF ID

59778

ENSMUST00000146384

Name

Eri3-206

Strand

Biotype

processed_transcript

Start-end positions

117564758-117674297

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:140546

Aliases

ENSMUSG00000033423,
Eri3, MGI:2153887, NCBI:140546,
OFF:Eri3, PINT1, Prnpip1

Chr 4

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
60176	183	GTG ...	VLD ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
59910	219	GTG ...	VPF ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, Testis, v6-5
1017445	222	GTG ...	VAD ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, v6-5
901278	117	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1017970	228	TTG ...	LPV ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, R1E, v6-5
61308	258	CTG ...	LAA ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Testis, v6-5
1227392	231	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
147439	54	ATG ...	MAG ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	ncRNA sORF	C2C12, E14, MEF, NSC, R1E, v6-5
149446	42	TTG ...	LRP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
148982	45	GTG ...	VDG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
59777	114	CTG ...	LKL ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
60839	180	CTG ...	LDF ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5

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