Transcript 588722

Transcript

ID CARD

MetamORF ID

588722

ENSMUST00000192049

Name

Eprs-203

Strand

Biotype

retained_intron

Start-end positions

185399658-185403539

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:107508

Aliases

2410081F06Rik,
3010002K18Rik, C79379, ENSMUSG00000026615,
Eprs, Eprs1, MGI:97838,
NCBI:107508, OFF:Eprs, Qprs

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
474377	72	GTG ...	VLQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, v6-5
588721	108	CTG ...	LLQ ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1183279	102	CTG ...	LKA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
810817	267	TTG ...	LTL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
1190685	36	AAG ...	KSL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1297858	132	AGG ...	RSI ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
458071	63	CTG ...	LRI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, v6-5
722785	138	CTG ...	LGR ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
637289	105	CTG ...	LQQ ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1292366	150	ATA ...	IKR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
786255	159	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
691262	63	CTG ...	LWK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
346259	261	TTG ...	LKA ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
1248616	57	ATT ...	IPP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
639127	120	CTG ...	LGT ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
649429	33	CTG ...	LLL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, NSC, R1E
1292840	126	ATA ...	INL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1284210	42	AAG ...	KTS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
945965	177	AAG ...	KSS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1272784	159	AAG ...	KLN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1191725	72	ATT ...	IES ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
717184	30	CTG ...	LPK ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
726199	90	CTG ...	LFL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
118043	279	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
488447	156	CTG ...	LNI ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF, R1E, v6-5
1197661	36	ATC ...	IKH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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