Transcript 639444

Transcript

ID CARD

MetamORF ID

639444

ENSMUST00000108713

Name

Epn2-204

Strand

Biotype

protein_coding

Start-end positions

61517249-61579685

CDS Start-stop positions

61519418-61546744

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:13855

Aliases

9530051D10Rik,
AA536924, ENSMUSG00000001036, Epn2,
Ibp2, MGI:1333766, NCBI:13855,
OFF:Epn2

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
656653	129	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, R1E
312129	96	CTG ...	LGP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, R1E
653586	51	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
293776	33	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	R1E
660091	108	CTG ...	LHR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
659056	84	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
649859	54	GTG ...	VMT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
303994	60	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
658617	207	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	3T3
655359	63	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
298261	36	ATG ...	MAR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
302555	45	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
295777	63	GTG ...	VEG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, R1E
295188	42	ATG ...	MTM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
303908	75	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
305429	78	ATG ...	MAK ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
300342	81	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	R1E
655353	129	CTG ...	LAC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
649064	36	CTG ...	LGW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
309170	69	ATG ...	MTV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC, R1E

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