Transcript 44102 | MetamORF

Transcript

ID CARD

MetamORF ID

44102

ENSMUST00000148859

Name

Entpd2-203

Strand

Biotype

processed_transcript

Start-end positions

25395916-25401292

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:12496

Aliases

Cd39l1,
ENSMUSG00000015085, Entpd2, MGI:1096863,
NCBI:12496, NTPDase2, OFF:Entpd2

Chr 2

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44822	159	TTG ...	LTN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
122212	114	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
44709	126	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44693	177	CTG ...	LGY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
44844	210	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
48116	150	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
49458	150	CTG ...	LIP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
46827	84	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
44633	117	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
94396	105	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
47001	165	CTG ...	LNL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
46947	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
46558	72	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
50925	222	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
119726	45	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
50089	264	TTG ...	LSR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
45642	132	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44384	42	TTG ...	LRQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
48258	48	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
47246	144	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
48918	54	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
45958	33	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
48174	129	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
48442	36	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
44197	63	TTG ...	LAA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Testis
49093	153	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
44101	99	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
46837	123	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
51250	81	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
49072	141	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
45961	69	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis

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