Transcript 782515

Transcript

ID CARD

MetamORF ID

782515

ENSMUST00000195664

Name

Eif5b-205

Strand

Biotype

retained_intron

Start-end positions

38044634-38048803

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:226982

Aliases

A030003E17Rik,
BC018347, Eif5b, ENSMUSG00000026083,
IF2, MGI:2441772, NCBI:226982,
OFF:Eif5b

Chr 1

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1038130	171	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
711697	57	TTG ...	LTG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
670432	69	ATG ...	MFS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1043746	114	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1045760	222	TTG ...	LNA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
32081	111	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
643870	45	ATG ...	MIG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1045926	210	TTG ...	LFY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
22440	147	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, v6-5
1038004	177	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
722128	39	ATG ...	MKS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell

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