Transcript 147875

Transcript

ID CARD

MetamORF ID

147875

ENSMUST00000203828

Name

Eif4g3-215

Strand

Biotype

protein_coding

Start-end positions

137993513-138206154

CDS Start-stop positions

-138206154

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:230861

Aliases

1500002J22Rik,
4930523M17Rik, Eif4g3, eIF4GII,
ENSMUSG00000028760, G1-419-52, Gm32394,
MGI:1923935, NCBI:230861, OFF:Eif4g3,
repro8

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
896578	66	ATT ...	IGL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
161205	165	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
548819	36	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	3T3
161217	117	TTG ...	LRP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain
552776	42	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
554961	222	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
557138	249	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
551033	42	TTG ...	LQL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
554554	126	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
545836	54	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
1230874	45	ATC ...	IGS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
155084	51	TTG ...	LRP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
548972	69	ATG ...	MPG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
161867	105	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
545168	57	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
151421	48	ATG ...	MQV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain
548620	66	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
550811	99	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
552482	36	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
147874	30	ATG ...	MHR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, E14
59265	57	CTG ...	LDR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Brain
165909	96	ATG ...	MHR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain

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