Transcript 11392 | MetamORF

Transcript

ID CARD

MetamORF ID

11392

ENSMUST00000169681

Name

Eif4b-201

Strand

Biotype

protein_coding

Start-end positions

102073773-102097172

CDS Start-stop positions

102073951-102095333

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:75705

Aliases

2310046H11Rik,
AL024095, C85189, Eif4a2,
Eif4b, ENSMUSG00000058655, MGI:95304,
NCBI:75705, OFF:Eif4b

Chr 15

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1618964	54	ATG ...	MRA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF
1180669	60	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1183007	30	AGG ...	RTW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
364213	150	CTG ...	LRL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
1182896	147	ATT ...	IQT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
685009	33	TTG ...	LRT ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
469544	75	CTG ...	LWM ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, MEF, Spleen_B_cell, v6-5
1181728	60	AGG ...	RSG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
975952	63	ACG ...	TLT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1183444	30	AGG ...	RES ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
788781	192	ATG ...	MTT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF
788871	195	ATG ...	MMT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1180793	45	AGG ...	RQW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1183883	57	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
366115	63	CTG ...	LPD ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
687340	33	CTG ...	LLT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, v6-5
789065	177	GTG ...	VGT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1184814	57	ATC ...	IAD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
469940	42	CTG ...	LYA ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
471476	78	CTG ...	LLH ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, R1E, Spleen_B_cell, v6-5
790015	210	GTG ...	VGT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
362617	39	CTG ...	LSQ ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
471205	123	ATG ...	MTC ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell, v6-5
1182545	117	ACG ...	TDI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
681839	126	ATG ...	MMT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
355105	72	ATG ...	MAK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, R1E
472281	84	CTG ...	LLC ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1182386	135	ATC ...	IGM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
790548	216	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
470106	99	CTG ...	LQA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1183233	39	ATC ...	IAD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
788701	231	GTG ...	VAE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
470442	96	ATG ...	MTP ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
948589	162	ATC ...	IEI ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1180275	99	AGG ...	RMT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1712569	153	ATG ...	MTD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
472064	129	ATG ...	MGI ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
11391	57	ATG ...	MTE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
788541	69	ATG ...	MAR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, MEF, v6-5
684591	60	CTG ...	LPH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, MEF
1617872	60	ATG ...	MRM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF
356416	45	CTG ...	LRL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
472469	30	TTG ...	LTQ ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
788258	165	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
1352054	72	ATG ...	MKP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
685092	48	TTG ...	LTG ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, R1E, v6-5
1184891	51	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1184065	162	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
364443	177	ATG ...	MAK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell, v6-5
1182549	39	AGG ...	RRS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
471308	54	CTG ...	LPD ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
682081	99	TTG ...	LTV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E
1043797	78	ATG ...	MGA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Neutrophil
1182164	42	ACG ...	TQR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1184690	75	ATC ...	ISE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
471823	48	TTG ...	LEG ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
470849	66	CTG ...	LLG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, R1E, Spleen_B_cell, v6-5
686027	42	TTG ...	LRS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF
948097	39	AAG ...	KQV ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
362409	33	CTG ...	LEG ...	Ribo-seq	CTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1181057	57	ATA ...	ISG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
365877	144	CTG ...	LSQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5

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