Transcript 3635 | MetamORF

Transcript

ID CARD

MetamORF ID

3635

ENSMUST00000032992

Name

Eif3c-201

Strand

Biotype

protein_coding

Start-end positions

126546455-126566411

CDS Start-stop positions

126546998-126566179

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:56347

Aliases

110kDa,
3230401O13Rik, Eif3c, Eif3s8,
ENSMUSG00000030738, MGI:1926966, NCBI:56347,
NIPIL(A3), NipilA3, OFF:Eif3c,
Xs, Xsl

Chr 7

ORFs

99 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4402	30	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
1257312	33	ACG ...	TGR ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1253749	111	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
425698	192	CTG ...	LKR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1258457	69	AGG ...	RKT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1097179	108	ATG ...	MPR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
425177	180	ATG ...	MRF ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
914108	36	AGG ...	RTR ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
426522	72	ATG ...	MRK ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Spleen_B_cell
915825	93	ATT ...	IPT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1254772	36	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
234484	114	ATG ...	MRA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
597909	75	GTG ...	VPS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, v6-5
425894	90	GTG ...	VSP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Spleen_B_cell
1098429	63	CTG ...	LCH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
78311	231	CTG ...	LSG ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
77058	276	CTG ...	LCE ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1259621	51	AGG ...	RTI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
234357	102	TTG ...	LTT ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
533370	57	GTG ...	VCL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
531204	99	CTG ...	LLK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Spleen_B_cell, v6-5
1254057	54	AGG ...	RVC ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
916765	156	ACG ...	TIG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
423336	36	GTG ...	VGT ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell, v6-5
1259861	51	ATA ...	IQR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
4753	54	GTG ...	VRT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, NSC, R1E, Skin_tumor
422430	54	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1097158	108	GTG ...	VQV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
425739	96	CTG ...	LQM ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, NSC, Spleen_B_cell, v6-5
1255863	93	ATA ...	IGS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
532003	132	CTG ...	LKR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, R1E, Spleen_B_cell
914012	69	ATT ...	IPT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1099264	33	CTG ...	LHP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
593092	48	ATG ...	MRS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, v6-5
535045	72	ATG ...	MRK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
597880	78	GTG ...	VSI ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, v6-5
911784	66	ACG ...	THD ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
424613	48	CTG ...	LPD ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell
1251697	105	ACG ...	TPA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
601646	39	ATG ...	MSF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
1260034	87	AAG ...	KMQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
233201	132	ATG ...	MRK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell
533950	39	ATG ...	MRT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
531219	141	GTG ...	VPL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
911558	84	ATA ...	IRW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
877261	33	CTG ...	LPM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, v6-5
531784	102	TTG ...	LLL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Spleen_B_cell, v6-5
1258083	120	AGG ...	RCP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
426483	99	TTG ...	LHI ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
221408	36	CTG ...	LRS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, v6-5
424242	66	TTG ...	LSE ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, NSC, R1E, Spleen_B_cell, v6-5
533807	45	ATG ...	MRM ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Spleen_B_cell
1067852	39	CTG ...	LER ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
426584	90	ATG ...	MKM ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
597569	75	TTG ...	LHI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
1577101	36	CTG ...	LIL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
4899	78	TTG ...	LER ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
916153	108	ATA ...	IRW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
601253	60	CTG ...	LTW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
914308	42	AGG ...	RRK ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
914585	168	AGG ...	RSG ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
844067	30	GTG ...	VAD ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, NSC
1097031	51	CTG ...	LPY ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1259963	168	AGG ...	RSE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
425522	144	TTG ...	LSS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Spleen_B_cell, v6-5
1254681	48	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
422411	90	ATG ...	MRH ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
426233	105	CTG ...	LSS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, MEF, NSC, Spleen_B_cell, v6-5
4741	60	ATG ...	MRR ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Skin_tumor, Spleen_B_cell
425653	39	TTG ...	LSE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
1258741	66	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
914568	42	AAG ...	KTR ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
224003	57	TTG ...	LTT ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E
530867	129	TTG ...	LNC ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
4812	81	TTG ...	LLE ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
422448	96	CTG ...	LKT ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Spleen_B_cell, v6-5
916316	99	ATA ...	IRK ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
532623	45	TTG ...	LPL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell, v6-5
1257020	72	ATC ...	IWC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
844380	48	TTG ...	LPR ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver, MEF, R1E, v6-5
425692	123	ATG ...	MGK ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
842574	39	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
1256126	114	AAG ...	KTV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
4608	54	TTG ...	LER ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
1258851	150	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1257272	117	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
912270	60	ATA ...	IST ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1260145	153	ATA ...	IGS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
422874	48	CTG ...	LSK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
424741	84	ATG ...	MQK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, NSC, Spleen_B_cell, v6-5
1254082	36	AGG ...	RQK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1260154	153	AGG ...	REQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
915185	39	AGG ...	RTT ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
424514	69	TTG ...	LSR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell, v6-5
1257795	150	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3634	57	TTG ...	LLE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, Spleen_B_cell
532462	75	GTG ...	VPS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, NSC, R1E, Spleen_B_cell, v6-5
916303	141	ATT ...	ISS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
426916	105	TTG ...	LWI ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5

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