Transcript 129092

Transcript

ID CARD

MetamORF ID

129092

ENSMUST00000148251

Name

Eif2a-206

Strand

Biotype

retained_intron

Start-end positions

58544233-58550726

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:229317

Aliases

D030048D22,
D3Ertd194e, Eif2a, ENSMUSG00000027810,
MGI:1098684, NCBI:229317, OFF:Eif2a

Chr 3

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
504080	156	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
749753	39	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
540467	60	TTG ...	LTL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E
749766	45	CTG ...	LFM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
538658	99	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
747959	57	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
1880861	207	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
538555	48	CTG ...	LIL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
752362	57	TTG ...	LRC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
752505	111	TTG ...	LFD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
750375	66	ATG ...	MEN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
136516	195	GTG ...	VPS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
538392	72	TTG ...	LQI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
751188	39	CTG ...	LIR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
536592	150	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
506228	75	ATG ...	MEN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
536138	81	ATG ...	MMC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
539472	126	CTG ...	LDL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
751580	126	ATG ...	MGI ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
506890	153	CTG ...	LVI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
538447	78	ATG ...	MCH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
129091	96	GTG ...	VPS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
750994	135	GTG ...	VLI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
536795	87	ATG ...	MLK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
536713	72	GTG ...	VIL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E
751489	30	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
752096	78	ATG ...	MAG ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
747513	141	ATG ...	MSQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
133550	30	TTG ...	LQQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
748306	84	TTG ...	LPD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
751154	102	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
539798	66	TTG ...	LAA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
539812	33	TTG ...	LPG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
537647	48	CTG ...	LVL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
139068	210	TTG ...	LHK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
537715	66	CTG ...	LCL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, R1E
540209	120	TTG ...	LEI ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
536490	54	TTG ...	LGL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
749186	57	GTG ...	VKC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
132600	150	TTG ...	LDG ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
749881	123	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
1881993	42	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
540386	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E

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