Transcript 392869

Transcript

ID CARD

MetamORF ID

392869

ENSMUST00000168382

Name

Eif1a-202

Strand

Biotype

protein_coding

Start-end positions

46597708-46609171

CDS Start-stop positions

46607700-46608134

CDS Relative positions

350-784

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:13664

Aliases

C76390,
Ef1a, Eftu, eIF-1A,
eIF-4C, Eif1a, Eif4c,
ENSMUSG00000057561, MGI:95298, NCBI:13664,
OFF:Eif1a

Chr 18

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
411499	87	AAG ...	KGS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
395666	78	CTG ...	LGM ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Spleen_B_cell
398317	36	ATG ...	MDG ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
398104	48	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, R1E
395395	45	TTG ...	LEM ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
484744	39	GTG ...	VDL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Liver, R1E
394759	45	CTG ...	LPV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, Spleen_B_cell
40624	66	CTG ...	LFA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, Liver
393820	51	ATG ...	MIL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
398661	36	ATG ...	MMK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
800950	66	ATG ...	MKM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
398834	69	TTG ...	LVT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, Spleen_B_cell
399995	168	CTG ...	LRF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	Brain, Spleen_B_cell
397710	54	TTG ...	LMI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
394044	33	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
396737	69	ATG ...	MMK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Spleen_B_cell
802793	87	GTG ...	VPY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
394892	60	CTG ...	LQH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, R1E
486789	96	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
398417	33	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, R1E
392977	66	ATG ...	MKS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Spleen_B_cell
392868	39	ATG ...	MMM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
398229	72	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Spleen_B_cell
399628	228	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	Brain, Spleen_B_cell
39475	54	CTG ...	LRK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E

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