Transcript 41368 | MetamORF

Transcript

ID CARD

MetamORF ID

41368

ENSMUST00000171203

Name

Ehd1-204

Strand

Biotype

retained_intron

Start-end positions

6294181-6297877

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:13660

Aliases

AA409636,
Ehd1, ENSMUSG00000024772, MGI:1341878,
NCBI:13660, OFF:Ehd1, Past1,
RME-1

Chr 19

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
720465	87	GTG ...	VVP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
962437	153	AAG ...	KLF ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
962608	51	AAG ...	KSS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
42823	240	CTG ...	LGK ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
961643	300	AAG ...	KAD ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
41433	105	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
1364453	108	CTG ...	LMP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
962562	63	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
41875	174	CTG ...	LLI ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
721468	174	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, v6-5
407967	132	TTG ...	LSG ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, NSC, Spleen_B_cell, v6-5
805511	39	ATG ...	MFS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
960451	57	ACG ...	TPP ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
961379	105	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1202011	177	AGG ...	RWS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
962210	84	AGG ...	RKL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
487819	126	CTG ...	LTT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell
962382	282	ACG ...	TQQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
490187	168	CTG ...	LIL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Spleen_B_cell
1679658	180	TTG ...	LSP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
961899	87	ACG ...	TPT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
722449	36	ATG ...	MTS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, R1E
1679759	183	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1203733	168	ATC ...	IPD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
41679	213	GTG ...	VVR ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
960332	93	AGG ...	RTS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
961268	228	ATC ...	INT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
406213	150	ATG ...	MTL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, Spleen_B_cell
720242	78	ATG ...	MPT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, v6-5
1200551	63	AAG ...	KRA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1362997	105	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	E14
1202253	288	ATC ...	IET ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
402522	138	CTG ...	LSL ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, NSC, Spleen_B_cell, v6-5
962758	81	AAG ...	KTS ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
961719	222	ACG ...	TGP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
402341	144	TTG ...	LRL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, Spleen_B_cell
41367	273	CTG ...	LMR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
488663	138	GTG ...	VVR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, NSC, Spleen_B_cell
406992	114	GTG ...	VWT ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, MEF, NSC, Spleen_B_cell, v6-5

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