Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

8159

ID

ENSMUST00000020329

Name

Egfr-201

Strand

+

Biotype

protein_coding

Start-end positions

16752211-16918158

CDS Start-stop positions

16752483-16911855

CDS Relative positions

-

Sequences

Transcript sequence

GTC ...

Gene

ID

NCBI:13649

Aliases

9030024J15Rik,
AI552599, Egfr, ENSMUSG00000020122,
Erbb, Errb1, Errp,
MGI:95294, NCBI:13649, OFF:Egfr,
wa-2, wa2, Wa5


Chr 11

ORFs

155 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

890130 36

CTG ...

LKG ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
891658 84

GTG ...

VEG ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
891045 207

GTG ...

VAG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888255 90

CTG ...

LSI ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
316300 123

TTG ...

LAY ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
889994 36

CTG ...

LHS ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889143 33

ATG ...

MCK ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, NSC,
v6-5
888947 81

CTG ...

LCD ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
891279 105

CTG ...

LQY ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889985 36

CTG ...

LSP ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
889722 45

ATG ...

MST ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
992367 111

CTG ...

LSQ ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
892117 45

ATG ...

MEA ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
991575 36

ATG ...

MCC ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
889094 48

TTG ...

LAP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
890281 72

ATG ...

MLM ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
8486 42

CTG ...

LQS ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, Skin_tumor
888447 87

TTG ...

LVL ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889252 84

GTG ...

VLC ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
891393 96

GTG ...

VLG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
992221 276

GTG ...

VAI ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
306956 63

TTG ...

LGW ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
891198 90

CTG ...

LWL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888812 105

ATG ...

MQW ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888621 54

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
991681 54

CTG ...

LSQ ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
890283 39

CTG ...

LRR ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
651336 108

GTG ...

VGL ...

Ribo-seq
GTG strong 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, NSC
890341 45

GTG ...

VWT ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
888181 75

TTG ...

LAY ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
890818 45

GTG ...

VKC ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
891411 135

ATG ...

MSA ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
890999 111

GTG ...

VQL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
992102 54

CTG ...

LHH ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888113 210

CTG ...

LFP ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888043 69

CTG ...

LMS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
889198 30

ATG ...

MLF ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
888014 48

TTG ...

LFE ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, NSC
890658 75

TTG ...

LML ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
892211 234

GTG ...

VPS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
891654 54

ATG ...

MPR ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC,
v6-5
293694 45

TTG ...

LVL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
890961 69

TTG ...

LLS ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
319577 96

TTG ...

LFE ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
889630 159

CTG ...

LSD ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
649291 240

GTG ...

VRS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
301517 45

CTG ...

LNA ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
312170 63

CTG ...

LPS ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
NSC
991204 81

GTG ...

VLR ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
888825 120

CTG ...

LSS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888917 57

CTG ...

LPT ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
889420 54

ATG ...

MKE ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
308333 30

ATG ...

MCW ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF
1393009 48

CTG ...

LPQ ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
890203 111

ATG ...

MRP ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889788 81

GTG ...

VAG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888614 57

GTG ...

VSK ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
318701 63

CTG ...

LPP ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
NSC, v6-5
889698 69

GTG ...

VLG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
991749 57

CTG ...

LPP ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
9504 93

CTG ...

LGR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, Skin_tumor
891689 150

ATG ...

MQM ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
991896 48

ATG ...

MPR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
891648 102

ATG ...

MDV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888441 30

TTG ...

LVN ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
892000 51

TTG ...

LAP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
1701317 39

CTG ...

LLG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1129311 60

GTG ...

VRG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, v6-5
890824 36

ATG ...

MES ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
892424 189

CTG ...

LAS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
646793 120

CTG ...

LGT ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, NSC
890739 30

CTG ...

LGT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
889579 45

CTG ...

LDP ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
1295695 81

AGG ...

RRA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
892115 123

CTG ...

LSS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
9489 63

GTG ...

VIQ ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, Skin_tumor
888289 87

ATG ...

MLQ ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889180 96

ATG ...

MSS ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888996 54

TTG ...

LGP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
889069 69

ATG ...

MQR ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC
8311 42

CTG ...

LRG ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, Skin_tumor
890639 75

CTG ...

LCQ ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
892434 234

GTG ...

VPT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888499 48

CTG ...

LCP ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, NSC
888949 48

CTG ...

LHC ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
309706 42

GTG ...

VLK ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
891052 108

ATG ...

MLQ ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
892031 168

CTG ...

LRG ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
891022 69

ATG ...

MGA ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
890174 198

GTG ...

VPT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889110 177

ATG ...

MPP ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
889651 39

ATG ...

MME ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
891089 192

GTG ...

VTA ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888902 186

CTG ...

LCR ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
310456 39

CTG ...

LKR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, NSC
292004 81

ATG ...

MSR ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
653304 96

CTG ...

LSR ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, NSC
892294 75

CTG ...

LPS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888258 66

CTG ...

LGQ ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
1294023 270

ATC ...

IWA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1398990 87

CTG ...

LPE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888106 96

CTG ...

LQY ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889989 36

ATG ...

MFP ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889469 39

CTG ...

LIT ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF
313653 42

CTG ...

LYL ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
NSC
314590 129

TTG ...

LGL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
307951 57

TTG ...

LWK ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
NSC
298040 60

CTG ...

LEK ...

Ribo-seq
CTG strong 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC
888910 141

CTG ...

LEE ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
891036 93

CTG ...

LGQ ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
892227 144

ATG ...

MPI ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888224 66

GTG ...

VTA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
892452 219

ATG ...

MAH ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
891725 57

CTG ...

LGQ ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
890718 36

CTG ...

LET ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889608 51

GTG ...

VGL ...

Ribo-seq
GTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889855 33

GTG ...

VVS ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF
1130019 48

ATG ...

MQH ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, v6-5
891796 72

GTG ...

VKC ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888936 108

GTG ...

VPS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888095 66

ATG ...

MSI ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
890170 75

CTG ...

LPS ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
644476 198

GTG ...

VSG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, NSC
887945 75

GTG ...

VEG ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
1394315 171

GTG ...

VSR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
644062 135

TTG ...

LPA ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver, MEF, NSC
891196 108

TTG ...

LNS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
653804 72

CTG ...

LCP ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    sORF
    Upstream
Liver, MEF
1398219 96

CTG ...

LCL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
888003 186

TTG ...

LMA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
891917 51

GTG ...

VAE ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
9251 96

CTG ...

LLG ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, Skin_tumor
889954 54

TTG ...

LGT ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889914 30

ATG ...

MYA ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
888476 288

CTG ...

LCA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
Liver
890199 183

ATG ...

MAH ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
892158 54

CTG ...

LRR ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC
8158 45

GTG ...

VLR ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC, Skin_tumor
991117 51

CTG ...

LLP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
419197 261

CTG ...

LDR ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12, Liver, NSC
888408 174

CTG ...

LSI ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
890258 30

GTG ...

VTW ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
1703198 36

CTG ...

LGR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
890414 36

TTG ...

LPL ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
891606 222

TTG ...

LMA ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
891244 171

GTG ...

VLR ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
646070 84

CTG ...

LDA ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    sORF
    Upstream
Liver, MEF, NSC
888906 87

GTG ...

VIQ ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
889390 87

TTG ...

LPS ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
888926 81

CTG ...

LPC ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889514 66

GTG ...

VKW ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
892332 207

GTG ...

VSR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
889505 111

TTG ...

LPP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
889412 81

TTG ...

LGL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
9103 30

ATG ...

MLL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC,
Skin_tumor

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5