Transcript 57012 | MetamORF

Transcript

ID CARD

MetamORF ID

57012

ENSMUST00000036854

Name

Efhd2-201

Strand

Biotype

protein_coding

Start-end positions

141858142-141874920

CDS Start-stop positions

141859747-141874867

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:27984

Aliases

2600015J22Rik,
AA408606, D4Wsu27e, Efhd2,
ENSMUSG00000040659, MGI:106504, NCBI:27984,
OFF:Efhd2

Chr 4

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900634	42	AGG ...	RIS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
896665	243	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
897544	96	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
57011	57	TTG ...	LRK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Neutrophil, Spleen_B_cell, Testis
60290	135	ATG ...	MSP ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, Testis
157938	45	CTG ...	LRG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
898353	48	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
899959	36	AGG ...	RIS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
897009	30	AGG ...	RKG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
900654	114	AGG ...	RVP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
901218	54	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
156518	30	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, NSC
58673	39	CTG ...	LSK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Neutrophil, Testis
61141	111	GTG ...	VPR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, Spleen_B_cell, Testis
900138	120	AGG ...	RQQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
900994	60	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
155724	36	CTG ...	LPR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, NSC, Spleen_B_cell
896621	42	ACG ...	TRL ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
897015	33	AGG ...	RVP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
155528	33	ATG ...	MMP ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
900037	78	AGG ...	RGV ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
161103	30	ATG ...	MPA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Spleen_B_cell
158181	54	ATG ...	MSP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, NSC, Spleen_B_cell

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