Transcript 433871

Transcript

ID CARD

MetamORF ID

433871

ENSMUST00000215821

Name

Tmod3-205

Strand

Biotype

protein_coding

Start-end positions

75520900-75559594

CDS Start-stop positions

75521341-75532551

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:50875

Aliases

ENSMUSG00000058587,
MGI:1355315, NCBI:50875, OFF:Tmod3,
Tmod3, U-Tmod, UTMOD

Chr 9

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
436450	81	CTG ...	LQG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell
85459	117	GTG ...	VEV ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5
437240	93	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
438982	54	GTG ...	VQW ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
439707	216	CTG ...	LTH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	CDS sORF	Liver, R1E, Spleen_B_cell
273741	111	ATG ...	MIL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
84138	42	ATG ...	MRT ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
6904	93	GTG ...	VWA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
273576	105	TTG ...	LTP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell, v6-5
417584	72	ATT ...	IQT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	MEF
436073	45	CTG ...	LPR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
273802	120	CTG ...	LSW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
87431	63	TTG ...	LRT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
86694	120	GTG ...	VVE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, Spleen_B_cell, v6-5
6335	66	GTG ...	VST ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
616502	30	TTG ...	LIE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
5949	57	CTG ...	LHH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, Spleen_B_cell, v6-5
439723	108	TTG ...	LRH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
439571	114	CTG ...	LNL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF Upstream	BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
434245	66	GTG ...	VGA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, Spleen_B_cell
439956	33	CTG ...	LCS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Spleen_B_cell
439033	84	GTG ...	VGA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5

Export data