Transcript 5939 | MetamORF

Transcript

ID CARD

MetamORF ID

5939

ENSMUST00000213882

Name

Eif3g-203

Strand

Biotype

retained_intron

Start-end positions

20895875-20896774

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:53356

Aliases

44kDa,
D0Jmb4, eIF3-p44, Eif3g,
Eif3s4, ENSMUSG00000070319, MGI:1858258,
NCBI:53356, OFF:Eif3g, p44,
TU-189B2

Chr 9

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1274115	204	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1273542	234	AAG ...	KGQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1832225	36	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
624016	72	TTG ...	LAT ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
1270877	36	ATT ...	IGP ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
5938	51	TTG ...	LFS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1271535	240	AAG ...	KLK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
5967	75	CTG ...	LSF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
6234	30	TTG ...	LEE ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Skin_tumor
259224	66	TTG ...	LCP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
6607	48	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1268788	93	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
623687	57	TTG ...	LTH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
623097	39	ATG ...	MWP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E

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