Transcript 5884 | MetamORF

Transcript

ID CARD

MetamORF ID

5884

ENSMUST00000213760

Name

Rpl4-202

Strand

Biotype

retained_intron

Start-end positions

64177135-64178270

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:67891

Aliases

2010004J23Rik,
ENSMUSG00000032399, MGI:1915141, NCBI:67891,
OFF:Rpl4, Rpl4

Chr 9

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
923826	30	ATA ...	IPF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
6420	126	TTG ...	LKL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell
1274006	210	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1692558	225	ATG ...	MWA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
6128	153	CTG ...	LLN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, Skin_tumor, Spleen_B_cell
6022	93	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1270353	81	AAG ...	KQQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
417377	87	ATC ...	IWT ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
417198	201	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
1274452	48	AAG ...	KPR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
6104	51	CTG ...	LYG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell
268366	60	TTG ...	LDE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell
417398	75	AAG ...	KMM ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
417423	33	AAG ...	KAA ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
6227	87	CTG ...	LPM ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, Skin_tumor, Spleen_B_cell
6605	33	CTG ...	LDG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
6093	120	CTG ...	LAP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, Skin_tumor, Spleen_B_cell
417194	129	ATT ...	ILK ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
5883	102	GTG ...	VGR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell
1692499	63	TTG ...	LDF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
5969	39	CTG ...	LHL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
1692856	231	GTG ...	VGM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
6144	135	CTG ...	LNI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell
267313	30	TTG ...	LAE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Liver
1692570	234	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1273763	30	ATC ...	IQR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
264153	45	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell

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