Transcript 78414 | MetamORF

Transcript

ID CARD

MetamORF ID

78414

ENSMUST00000212973

Name

Ist1-204

Strand

Biotype

retained_intron

Start-end positions

109671329-109693260

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:71955

Aliases

2400003C14Rik,
AW536298, ENSMUSG00000031729, Ist1,
MGI:1919205, mKIAA0174, NCBI:71955,
OFF:Ist1

Chr 8

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5138	42	CTG ...	LHL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
235888	108	GTG ...	VGF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
246221	87	GTG ...	VDC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
248236	99	GTG ...	VSQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
79077	153	GTG ...	VDN ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
79548	180	CTG ...	LAQ ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, Testis
80555	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
82192	33	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
78917	96	TTG ...	LGD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
80811	144	CTG ...	LAA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
240345	33	TTG ...	LMI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
239310	105	CTG ...	LWI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
82206	129	CTG ...	LPE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
429595	51	CTG ...	LLG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell
5715	39	ATG ...	MAS ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell
237597	39	CTG ...	LLA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
78538	78	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
79569	90	GTG ...	VPM ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Neutrophil, Testis
246697	51	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
918862	213	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
82178	90	TTG ...	LPV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
240968	48	TTG ...	LCP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
249884	42	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, Spleen_B_cell
239065	42	GTG ...	VTC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
81554	99	CTG ...	LIE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
81229	111	GTG ...	VPD ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
5432	66	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
428112	48	TTG ...	LGW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Spleen_B_cell
248757	54	CTG ...	LYC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver
78413	201	GTG ...	VET ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, Testis
237966	60	TTG ...	LCR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Spleen_B_cell
242790	78	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
80705	39	ATG ...	MLP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
429842	36	CTG ...	LRL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
250135	36	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
243358	84	TTG ...	LYC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
755820	132	GTG ...	VHY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
78436	111	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, Liver, Testis
81797	87	CTG ...	LMG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
430906	66	TTG ...	LDA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
245706	36	ATG ...	MYP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
80582	84	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
80916	57	CTG ...	LTT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
239299	30	ATG ...	MIF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
79299	141	CTG ...	LSV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, Liver, Testis
603293	36	CTG ...	LGC ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
81277	162	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Testis
239446	117	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
244308	60	GTG ...	VPN ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF
81501	108	GTG ...	VEH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
756849	57	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
81456	120	TTG ...	LPS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
78515	33	CTG ...	LEP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
244010	57	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
80094	60	TTG ...	LLT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
243832	60	CTG ...	LEL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver
79990	84	GTG ...	VGT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
80813	36	CTG ...	LGS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
757517	60	CTG ...	LEW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
5597	33	GTG ...	VQD ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF
5363	75	TTG ...	LPI ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF
245020	33	ATG ...	MSE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
247248	126	CTG ...	LQS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain

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