Transcript 5246 | MetamORF

Transcript

ID CARD

MetamORF ID

5246

ENSMUST00000212920

Name

Cyb5b-202

Strand

Biotype

processed_transcript

Start-end positions

107165915-107185990

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:66427

Aliases

1810044O22Rik,
AU015618, Cyb5b, Cyb5m,
ENSMUSG00000031924, MGI:1913677, NCBI:66427,
OFF:Cyb5b

Chr 8

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
78752	63	TTG ...	LVC ...	Ribo-seq	TTG	strong	12	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
79359	63	GTG ...	VGA ...	Ribo-seq	GTG	strong	17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
79966	180	CTG ...	LEQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Neutrophil, Testis
83051	129	GTG ...	VAA ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
78882	117	ATG ...	MLF ...	Ribo-seq	ATG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
79047	51	CTG ...	LKA ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
82056	42	TTG ...	LKM ...	Ribo-seq	TTG	moderate	17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
5245	39	TTG ...	LYR ...	Ribo-seq	TTG	weak	18	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
81452	96	CTG ...	LAG ...	Ribo-seq	CTG	strong	17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
80065	33	GTG ...	VTL ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
80491	183	CTG ...	LLE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, Neutrophil, Testis
78991	60	CTG ...	LMQ ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
79618	57	ATG ...	MQL ...	Ribo-seq	ATG	weak	16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
82897	111	CTG ...	LGI ...	Ribo-seq	CTG		20	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
237517	72	CTG ...	LGV ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
236385	30	TTG ...	LSP ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
80290	36	ATG ...	MSA ...	Ribo-seq	ATG	moderate	16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
5471	63	GTG ...	VLM ...	Ribo-seq	GTG	weak	17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
82678	105	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
83079	120	GTG ...	VIS ...	Ribo-seq	GTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1567503	72	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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