Transcript 3804 | MetamORF

Transcript

ID CARD

MetamORF ID

3804

ENSMUST00000211759

Name

Taldo1-205

Strand

Biotype

processed_transcript

Start-end positions

141399428-141402968

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:21351

Aliases

ENSMUSG00000025503,
MGI:1274789, NCBI:21351, OFF:Taldo1,
Taldo1

Chr 7

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
913508	87	AGG ...	RPS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
75115	144	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
73271	30	TTG ...	LER ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Testis
422744	240	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
1254960	135	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1252301	63	AAG ...	KTK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
73680	105	CTG ...	LHN ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
77156	276	CTG ...	LAG ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
913641	36	ATA ...	IKL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
78236	228	CTG ...	LLK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
915870	57	ATA ...	IKL ...	Ribo-seq	ATA		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
530857	150	ATG ...	MES ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
77642	207	CTG ...	LAP ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
222246	69	TTG ...	LAA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	E14, NSC, Spleen_B_cell
77500	102	GTG ...	VEK ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
532217	186	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, Spleen_B_cell
74391	105	CTG ...	LGE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
915218	99	ATC ...	IWT ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
78017	237	CTG ...	LGE ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1025071	96	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1258397	156	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
915622	66	ACG ...	TKT ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1252018	210	AAG ...	KKF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
75023	81	GTG ...	VEK ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
532209	141	GTG ...	VEH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
530903	168	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Neutrophil
223386	216	GTG ...	VSP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Neutrophil, v6-5
912324	93	ACG ...	TRR ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
4721	150	CTG ...	LDE ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
73225	129	CTG ...	LDE ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
914595	162	ATG ...	MPW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1259653	210	AAG ...	KLA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
3803	117	GTG ...	VTR ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
912322	207	AAG ...	KFG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1253212	129	AAG ...	KHW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
4777	51	TTG ...	LER ...	Ribo-seq	TTG		13	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
74140	111	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, Testis
77834	126	CTG ...	LHN ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5

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