Transcript 5295 | MetamORF

Transcript

ID CARD

MetamORF ID

5295

ENSMUST00000211664

Name

Saraf-204

Strand

Biotype

retained_intron

Start-end positions

34154681-34170818

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:67887

Aliases

1810045K07Rik,
ENSMUSG00000031532, MGI:1915137, NCBI:67887,
OFF:Saraf, Saraf, Tmem66

Chr 8

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
246574	99	CTG ...	LWL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
245741	63	CTG ...	LEQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
241205	159	CTG ...	LAM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
5294	57	ATG ...	MQT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
880384	132	TTG ...	LKC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
80261	63	CTG ...	LSA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
82112	72	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
604237	264	CTG ...	LYS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
248353	39	ATG ...	MSS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
1104695	30	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
609563	33	CTG ...	LLG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E
248200	45	GTG ...	VLE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
249050	102	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
428868	207	TTG ...	LRD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E, Spleen_B_cell
1384902	222	CTG ...	LFV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
606309	135	GTG ...	VCS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
244428	42	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
246730	153	ATG ...	MVQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
881488	150	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
248246	129	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1445688	192	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
603903	48	CTG ...	LGA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
237918	69	GTG ...	VKA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
428479	198	GTG ...	VKA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E, Spleen_B_cell
237231	150	GTG ...	VQA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
241587	84	CTG ...	LRL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
1264898	120	AGG ...	RFA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
240906	51	CTG ...	LKT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver
237290	72	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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