Transcript 82432 | MetamORF

Transcript

ID CARD

MetamORF ID

82432

ENSMUST00000211312

Name

Cpe-204

Strand

Biotype

processed_transcript

Start-end positions

64617601-64621997

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:12876

Aliases

Cpe,
CPH, Cph-1, Cph1,
ENSMUSG00000037852, fat, MGI:101932,
NCBI:12876, NF-alpha1, OFF:Cpe,
R74677

Chr 8

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
82431	165	TTG ...	LIT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, Testis, v6-5
244839	108	TTG ...	LGT ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
79772	168	CTG ...	LCN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
81104	93	GTG ...	VVV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
245453	81	TTG ...	LDG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
243097	90	ATG ...	MRR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
247140	129	GTG ...	VNL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
246314	96	ATG ...	MVM ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
249737	123	CTG ...	LNL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
81642	192	CTG ...	LLI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
79823	81	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
1107109	30	TTG ...	LWA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
5214	48	CTG ...	LVC ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
79873	78	TTG ...	LSP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, v6-5
81935	90	GTG ...	VVF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
79363	180	TTG ...	LAQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC

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