Transcript 72302 | MetamORF

Transcript

ID CARD

MetamORF ID

72302

ENSMUST00000211152

Name

Kdelr1-202

Strand

Biotype

retained_intron

Start-end positions

45872887-45874365

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:68137

Aliases

8030486F04Rik,
AW215843, ENSMUSG00000002778, Erd2.1,
Kdelr1, MGI:1915387, NCBI:68137,
OFF:Kdelr1

Chr 7

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
228335	51	CTG ...	LLF ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, v6-5
76266	99	ATG ...	MMA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Testis, v6-5
912374	87	ACG ...	TTL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
74214	195	GTG ...	VVY ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
1099538	96	CTG ...	LRC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, NSC, v6-5
212822	114	CTG ...	LPE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
416086	81	ATT ...	IPG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
75215	105	GTG ...	VEF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
1102083	126	CTG ...	LPF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
75801	165	GTG ...	VWM ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, Testis, v6-5
72301	96	ATG ...	MAT ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Testis, v6-5
223979	54	TTG ...	LFL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, Neutrophil, NSC, v6-5
4232	69	CTG ...	LWC ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
4606	57	CTG ...	LPD ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
212632	72	TTG ...	LLW ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
211489	36	GTG ...	VDD ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, NSC, v6-5

Export data