Transcript 82485 | MetamORF

Transcript

ID CARD

MetamORF ID

82485

ENSMUST00000210783

Name

Cpe-203

Strand

Biotype

processed_transcript

Start-end positions

64592830-64596677

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:12876

Aliases

Cpe,
CPH, Cph-1, Cph1,
ENSMUSG00000037852, fat, MGI:101932,
NCBI:12876, NF-alpha1, OFF:Cpe,
R74677

Chr 8

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
82484	207	TTG ...	LQL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, Testis
1029463	192	GTG ...	VLV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
1106057	54	GTG ...	VVE ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
79677	90	CTG ...	LET ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC
610106	51	TTG ...	LSL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
243388	45	TTG ...	LME ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
82066	96	TTG ...	LLL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
1263616	69	AGG ...	RKE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
611447	141	ATG ...	MFC ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
612602	147	CTG ...	LAI ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
1108181	51	GTG ...	VEN ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
240321	75	CTG ...	LVF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
252627	129	GTG ...	VAV ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, R1E
1030604	60	GTG ...	VAV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, NSC
81326	60	CTG ...	LAT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
609796	45	TTG ...	LSL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC
604972	33	CTG ...	LKG ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC
79857	117	ATG ...	MGI ...	Ribo-seq	ATG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
1029704	78	CTG ...	LAI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
83022	222	ATG ...	MSK ...	Ribo-seq	ATG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1028645	189	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC
612520	195	TTG ...	LLA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC
1029357	216	CTG ...	LKV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
612299	126	TTG ...	LLA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
239913	99	GTG ...	VDF ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
610886	144	TTG ...	LMF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC
612060	30	CTG ...	LAI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF

Export data