Transcript 72404 | MetamORF

Transcript

ID CARD

MetamORF ID

72404

ENSMUST00000209630

Name

Rrm1-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

102463722-102468682

CDS Start-stop positions

-102466905

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:20133

Aliases

ENSMUSG00000030978,
MGI:98180, NCBI:20133, OFF:Rrm1,
RnrM1, Rrm1

Chr 7

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
76288	126	CTG ...	LNK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, E14, R1E, Testis
914396	87	ATA ...	IRP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
1257016	183	AAG ...	KTG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	NMD sORF	E14
76791	90	CTG ...	LKE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	NMD sORF	3T3, B_cell, E14, R1E, Testis
76882	123	GTG ...	VNP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, R1E, Testis
1254508	48	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1253103	48	AGG ...	RCF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
4065	93	GTG ...	VGN ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, Brain, R1E
1256871	66	AGG ...	RNT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
75871	108	CTG ...	LKD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	3T3, Brain, R1E, Testis
73075	84	TTG ...	LWN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	Brain, E14, R1E, Testis
1257045	186	ATT ...	IPD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
1689547	87	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
72780	111	CTG ...	LKD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	NMD sORF	3T3, R1E, Testis
1255318	66	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
74740	39	TTG ...	LEN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	Liver, Testis
1256335	72	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	NMD sORF	E14
531376	57	CTG ...	LFS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	3T3
914290	162	AGG ...	RTR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	NMD sORF	BMDC
72403	48	GTG ...	VCS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	NMD sORF	Brain, E14, Liver, Testis
423480	30	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1252071	96	ATC ...	IDQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
915703	51	ATA ...	IPV ...	Ribo-seq	ATA		2	sORFs_org_Mouse	NMD sORF	BMDC, E14
1256769	159	ACG ...	TRP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
1253216	117	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1252273	123	AAG ...	KMA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
76305	153	GTG ...	VWE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	3T3, Brain, E14, Liver, R1E, Testis
912951	144	ATC ...	ISQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	BMDC
912906	135	AAG ...	KTV ...	Ribo-seq	AAG		2	sORFs_org_Mouse	NMD sORF	BMDC, E14
914741	72	ATC ...	IHI ...	Ribo-seq	ATC		2	sORFs_org_Mouse	NMD sORF	BMDC, E14
76724	174	CTG ...	LKQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	NMD sORF	3T3, BMDC, Brain, E14, Liver, R1E, Testis
532751	60	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, R1E

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