Transcript 3683 | MetamORF

Transcript

ID CARD

MetamORF ID

3683

ENSMUST00000209165

Name

Zfand6-210

Strand

Biotype

protein_coding

Start-end positions

84615841-84689883

CDS Start-stop positions

-84634392

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:65098

Aliases

3110005P07Rik,
Awp1, ENSMUSG00000030629, MGI:1929510,
NCBI:65098, OFF:Zfand6, Za20d3,
Zfand6

Chr 7

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
224476	87	GTG ...	VCT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
216881	78	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	B_cell
416057	138	AAG ...	KKL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	E14
221869	90	GTG ...	VVC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	B_cell
912351	93	ATC ...	ILT ...	Ribo-seq	ATC		2	sORFs_org_Mouse	sORF	BMDC, E14
1255678	69	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
598142	66	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	E14
1257226	93	ATC ...	IAV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
595887	60	CTG ...	LNP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
879164	84	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
221487	99	ATG ...	MFT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	B_cell, E14
217738	69	ATG ...	MFT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	B_cell
914954	228	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
228879	117	TTG ...	LNA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
231053	300	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Liver
915058	120	AAG ...	KHL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
415856	84	ATG ...	MET ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
4513	51	CTG ...	LWT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
590165	33	ATG ...	MAV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
595195	36	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	Liver
3682	33	CTG ...	LRQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, Liver, Skin_tumor
915534	117	TTG ...	LKN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
914617	45	ATT ...	ILR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
878416	75	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
4312	30	GTG ...	VQE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	B_cell, MEF, Testis
4015	39	CTG ...	LFH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, E14, MEF, Testis
217999	105	GTG ...	VEM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	B_cell

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