Transcript 211302

Transcript

ID CARD

MetamORF ID

211302

ENSMUST00000207762

Name

Eif3k-203

Strand

Biotype

retained_intron

Start-end positions

28972917-28981783

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:73830

Aliases

1200009C21Rik,
Eif3k, Eif3s12, ENSMUSG00000053565,
MGI:1921080, NCBI:73830, OFF:Eif3k

Chr 7

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4028	39	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
843730	63	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
72454	78	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
76643	108	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
74303	45	GTG ...	VGK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
74218	123	CTG ...	LFT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
3723	78	CTG ...	LPR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
843073	72	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
227082	30	ATG ...	MIW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
221618	36	ATG ...	MPM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
224181	87	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
75048	33	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
73692	87	TTG ...	LAT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
72809	96	ATG ...	MHH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
74912	36	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
76806	66	GTG ...	VET ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
226318	96	CTG ...	LDE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
216440	30	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
73123	69	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
75889	87	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
225954	60	ATG ...	MWR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
74895	72	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell

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