Transcript 415795

Transcript

ID CARD

MetamORF ID

415795

ENSMUST00000207079

Name

Akap13-202

Strand

Biotype

retained_intron

Start-end positions

75611833-75677562

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:75547

Aliases

1700026G02Rik,
5730522G15Rik, 5830460E08Rik, AKAP-13,
AKAP-Lbc, Akap13, BRX,
ENSMUSG00000066406, Ht31, LBC,
MGI:2676556, NCBI:75547, OFF:Akap13,
PROTO-LB, PROTO-LBC

Chr 7

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
842970	54	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
592704	123	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
840205	120	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
844699	156	CTG ...	LCA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
842450	138	GTG ...	VPM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
842243	87	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
415927	114	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
913329	54	AAG ...	KRR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
416211	126	CTG ...	LAK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
416033	195	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
845156	99	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
841797	102	GTG ...	VIQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
912672	96	AGG ...	RSS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
845027	81	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
840916	117	CTG ...	LES ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
841637	39	ATG ...	MAV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
842377	99	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
843456	132	ATG ...	MAF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
914983	168	ATG ...	MYE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
841080	33	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	B_cell
840030	72	ATG ...	MTQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
840337	282	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
415794	102	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	C2C12

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