Transcript 69470 | MetamORF

Transcript

ID CARD

MetamORF ID

69470

ENSMUST00000205180

Name

Sem1-202

Strand

Biotype

retained_intron

Start-end positions

6576414-6578663

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:20422

Aliases

DSS1,
ENSMUSG00000042541, MGI:109238, NCBI:20422,
OFF:Sem1, Sem1, Shfdg1,
Shfg, Shfm1

Chr 6

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
977737	183	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
977791	192	TTG ...	LGL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
69469	45	ATG ...	MVA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Spleen_B_cell, Testis
3027	93	TTG ...	LAR ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Spleen_B_cell, Testis
415559	132	AGG ...	RLP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
69858	135	CTG ...	LRL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell, Testis
204230	30	TTG ...	LSG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, R1E, Spleen_B_cell
977701	207	AAG ...	KQP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
909539	276	AAG ...	KRT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
69981	120	TTG ...	LRP ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E, Spleen_B_cell, Testis

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