Transcript 415156

Transcript

ID CARD

MetamORF ID

415156

ENSMUST00000205078

Name

Ints13-211

Strand

Biotype

retained_intron

Start-end positions

146573180-146577780

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:71177

Aliases

4933424B01Rik,
Asun, ENSMUSG00000040250, Ints13,
MGI:1918427, NCBI:71177, OFF:Ints13,
Spata30

Chr 6

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907744	69	ATG ...	MLK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
578276	30	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
580819	39	GTG ...	VDL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, v6-5
1314821	48	TTG ...	LDS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1092513	177	GTG ...	VEF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1092436	162	CTG ...	LVK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1667043	90	CTG ...	LNL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1095116	228	GTG ...	VFV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
527801	90	ATG ...	MAG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Spleen_B_cell
908016	255	AAG ...	KIF ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
527550	66	GTG ...	VRT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
1670247	66	TTG ...	LWI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1093218	159	GTG ...	VKN ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
578992	111	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1092484	219	GTG ...	VDH ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1092133	129	TTG ...	LAP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
583131	33	CTG ...	LRL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1809479	108	TTG ...	LWT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
528550	150	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
579897	66	TTG ...	LWG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
579063	90	TTG ...	LSR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
415155	282	ATG ...	MSR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	C2C12
578399	78	CTG ...	LAC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
1093574	33	TTG ...	LLS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, v6-5
576805	36	GTG ...	VLA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1667914	69	TTG ...	LLW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
525664	81	CTG ...	LCE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Spleen_B_cell

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