Transcript 2680 | MetamORF

Transcript

ID CARD

MetamORF ID

2680

ENSMUST00000204437

Name

Mxd1-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

86650800-86669100

CDS Start-stop positions

86658106-86669008

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:17119

Aliases

AW122478,
ENSMUSG00000001156, Mad, Mad1,
MGI:96908, Mxd1, NCBI:17119,
OFF:Mxd1

Chr 6

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
835359	120	GTG ...	VSD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
68984	168	GTG ...	VEG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
70086	180	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
2808	144	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Skin_tumor
69273	204	CTG ...	LDV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
2679	156	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Skin_tumor
2999	75	CTG ...	LPY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Neutrophil, Skin_tumor, Testis
836083	138	CTG ...	LGW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
3135	135	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Skin_tumor
70705	198	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
837444	111	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	B_cell
70011	174	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis
3018	132	CTG ...	LRY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Skin_tumor
69334	186	GTG ...	VDV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Testis

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